Papaemmanouil Receives Funding from Huawei Technologies

Olga PapaemmanouilShenzhen-based Huawei Technologies, the largest manufacturer of telecom equipment in the world, is supporting Associate Professor of Computer Science Olga Papaemmanouil‘s efforts to develop machine learning approaches for managing the performance of data management systems. The grant will support research on workload management, that is the task of query placement, query scheduling and resource allocation for database applications. Workload management is an extremely critical task for database systems as it can impact the execution time of incoming processing tasks as well as the overall perceived performance of the database  and the quality of the service (QoS) offered to end-clients. The complexity of the problem increases for applications that involve dynamically changing workloads and concurrently executing queries sharing the same underlying resources, as well as applications that are deployed on data clusters with fluctuating resource availability.

Dr. Papaemmanouil’s research aims to design frameworks that can be trained on application-specific properties and performance metrics  to automatically learn how to effectively dispatch incoming queries across a cluster of servers, implicitly solving the resource allocation challenge. These techniques will rely on machine learning algorithms (reinforcement learning and deep learning)  that model the interaction of concurrently running queries  as well as the relationship between database performance and the underlying resource availability in the cluster. The project will lead the way towards the development of workload management solutions that eliminate ad-hoc heuristics often used by database administrators to address these challenges and replace them with software modules capable of providing custom workload management strategies to end-clients.

Olga Papaemmanouil Promoted to Associate Professor

During the November Board of Trustees meeting, Olga Papaemmanouil (Computer Science) was promoted to associate professor with tenure. She joined Brandeis in 2009 after receiving her Ph.D. in Computer Science from Brown University. Her work revolves around data management systems and distributed systems.

Her research aims to  offer insight on the complexity of the data sets and operations involved in data management systems and use this insight to produce solutions and optimizations that improve these systems’ effectiveness and efficiency. Her research is motivated by practical applications and offers real-world tools and services that assist application developers in tacking the challenges of building, managing and optimizing data-driven applications.

Her work covers a broad range of data-driven challenges, including big data exploration and analytics, workload and resource management for cloud databases, query optimization and query performance prediction.

Olga won an NSF Career Award for her work on performance tuning of cloud databases and her research has been funded by the National Science Foundation, Hewlett Packard, Amazon, Google and Huawei Technologies.

Jordan Pollack Receives Lifetime Achievement Award

Jordan Pollack

The International Society for Artificial Life. has awarded a lifetime achievement award to Jordan Pollack, Professor of Computer Science and Chairman of Computer Science department, for his work on robotics, computer-simulated evolution and artificial life forms. Pollack, who has been a Brandeis faculty member for the past 23 years, is also the director of the Dynamical & Evolutionary Machine Organization (DEMO). DEMO is a research lab where Pollack and his students study recurrent neural networks, evolutionary computation, and dynamical systems.

Pollack received the lifetime award last week (September 4-8) at The European Conference on Artificial Life 2017 in Lyon, France. Nick Moran and Jordan Pollack’s paper “Effects of Cooperative and Competitive Coevolution on Complexity in a Linguistic Prediction Game” (MITCogNet) also received the best paper award at the conference.

In an interview with Brandeis Now, Professor Pollack discusses his career and research.

Brandeis Receives Major Grant from the Mellon Foundation

Brandeis University has received a major grant to expand the LAPPS Grid Project that seamlessly connects open-source computer programs to quickly analyze huge amounts of language from diverse sources and genres.

James Pustejovsky

James Pustejovsky

Brandeis University has been awarded a two-year, $390,000 grant from the Andrew W. Mellon Foundation to lead an international collaboration to link the two major American and European infrastructures for the computational analysis of natural language. The resulting meta-framework has the potential to transform scholarship and development across multiple disciplines in the sciences, language and social sciences, and digital humanities by enabling scholars in Europe, the US, and Asia to work seamlessly across a massive range of software tools and data resources, developed separately by the American and European efforts. Led by James Pustejovsky, the TJX/ Feldberg Professor of Computer Science at Brandeis, the project team includes Nancy Ide (Vassar College), Erhard Hinrichs (University of Tübingen), and Jan Hajic (Charles University Prague).

The Language Applications (LAPPS) Grid Project—a collaborative, NSF-funded effort among Vassar, Brandeis, Carnegie Mellon University, and the Linguistic Data Consortium at the University of Pennsylvania—and the European Common Language Resources and Technology Infrastructure (CLARIN) are both frameworks (“grids”) that create and provide access to a broad range of computational resources for analyzing vast bodies of natural language data: digital language data collections, digital tools to work with them, and expertise for researchers to use them. Within each framework, members adhere to common standards and protocols, so that tools and data from different projects are “interoperable”: users can access, combine, and chain data from different repositories and tools from different sources to perform complex operations on a single platform with a single sign-on.

But the LAPPS Grid and CLARIN are not themselves interoperable. Researchers using data and tools in one framework cannot easily access or add data and tools from the other. LAPPS Grid users cannot access CLARIN’s multi-lingual services for digital humanities, social sciences, and language technology research and development, like Prague’s tools for search of oral history archives (developed to support their hosting the USC Shoah Archive), or Tübingen’s WebLicht services for data mining political and social science documents. CLARIN users don’t have access to the LAPPS Grid’s state-of-the-art tools for English and, through the LAPPS Grid’s federation with five Asian grids, to services providing a broad spectrum of capabilities for work in Asian languages. Scholars manually annotating a text corpus with CLARIN’s WebAnno (developed at TU-Darmstadt) would love to feed their work through iterative machine learning and evaluation facilities in the LAPPS Grid—but can’t.

The new Mellon Foundation funding will enable the project team to make the two grids interoperable on three levels:

  • Infrastructural: While the LAPPS Grid and CLARIN are both committed to open data and software, they do provide secure access to licensed resources, including the vast majority of the language data available over the web. The team will create a “trust network” between the two services, enabling single-authentication sign-on;
  • Technical: The LAPPS Grid and CLARIN have different underlying architectures and data exchange formats. The team will map these architectures and formats onto one another, enabling communication between the two frameworks over the web;
  • Semantic: To combine differently curated datasets, the data needs not only to share or be converted into a common format, but must also share a vocabulary for describing basic linguistic structures (a common language ontology) that tells computers how to combine the data into meaningful statements. The project team will extend the common exchange vocabulary developed by the LAPPS Grid to the web services of both frameworks and implement a set of conversion services.

The project will dramatically extend the power and reach of both the European and American frameworks and put their combined resources at the direct disposal of scholars from a broad range of fields in the humanities and social sciences, without requiring them to be computer programmers. “It will effectively create an ‘internet of language applications’ for the everyday computer user,” explained Dr. Pustejovsky. “We’re going to give every scholar access to a toolkit that’s now only available to the largest corporations.”

 

Division of Science Hosts the 2016 Undergraduate Science Symposium

Written by Jena Pitman-Leung.

uss-img1

The Division of Science Graduate Affairs group hosted the 2nd annual Brandeis University Undergraduate Science Symposium on Saturday 17th, 2016. More than 60 students representing institutions from Massachusetts, Rhode Island, and New Hampshire attended the event, which was held in the Shapiro Science Center. The morning session included research talks from faculty in the Life Sciences (Don Katz, Liz Hedstrom) and the Physical Sciences (Matt Headrick, Christine Thomas), followed by panel discussions with faculty in the Life Sciences (Liz Hedstrom, Bruce Goode, and Maria Miara) and Physical Sciences (Gabriella Sciolla, Isaac Krauss, Jordan Pollack) on how to apply to graduate school. The students then came together for a networking lunch with Brandeis students, postdocs, and faculty. Lunch was followed by a well attended poster session, where 38 students had the opportunity to present their independent research. The day ended by awarding prizes for the best posters in five disciplines. The winners were:

Biology: Rahim Hirani, Hampshire College, “The regulatory role of Beta-Arrestin 1 in prostate cancer cell proliferation”
Neuroscience: Paige Miranda, Wellesley College, “Metabolic Processes Driving Hippocampal Long Term Potentiatio”
Biochemistry: Myfanwy Adams, Wellesley College, “Expression of a Cardiac ATP-sensitive Potassium Channel in a Heterologous Cell Line”
Chemistry: Natsuko Yamagata, Brandeis University, “Exploring the Unexplored: Supramolecular Hydrogels of Retro-Inverso Peptides for 3D Cell Culture”
Physics: Jameson O’Reilly, Northeastern University, “A capillary-mimicking optical tissue phantom for diffuse correlation spectroscopy”

The Division of Science is committed to supporting local undergraduate research, and is excited about the possibility of these bright young scientist choosing Brandeis for their graduate study. We look forward to hosting similar events in the future!

7 Division of Science Faculty Recently Promoted

Congratulations to the following 7 Division of Science faculty members were recently promoted:

katz_dbDonald B. Katz (Psychology) has been promoted to Professor of Psychology. Don came to Brandeis as an Assistant Professor with a joint appointment in the Volen Center for Complex Systems in 2002 and was promoted to Associate Professor and awarded tenure in 2008. Don’s teaching and research serve central roles in both Psychology and the Neuroscience program. His systems approach to investigating gustation blends behavioral testing of awake rodents with multi-neuronal recording and pharmacological, optogenetic, and modelling techniques. Broad themes of the neural dynamics of perceptual coding, learning, social learning, decision making, and insight run through his work on gustation. For his research, Don has won the 2007 Polak Award and the 2004 Ajinomoto Young Investigator in Gustation Award, both from the Association for Chemoreception Sciences. Don has taught “Introduction to Behavioral Neuroscience” (NPSY11b), “Advanced Topics in Behavioral Neuroscience” (NPSY197a), “Neuroscience Proseminar” (NBIO250a), “Proseminar in Brain, Body, and Behavior II” (PSYC302a), “How Do We Know What We Know?” (SYS1c). For his excellence in teaching, Don has been recognized with the 2013 Jeanette Lerman-Neubauer ’69 and Joseph Neubauer Prize for Excellence in Teaching and Mentoring, the 2006 Brandeis Student Union Teaching Award, and the 2006 Michael L. Walzer Award for Teaching and Scholarship.

Nicolas RohlederNicolas Rohleder (Psychology) has been promoted to Associate Professor in Psychology. Nic is a member of the Volen Center for Complex Systems and on the faculty of the Neuroscience and Health, Science, Society and Policy programs. His course offerings include “Health Psychology” (PSYC38a), “Stress, Physiology and Health” (NPSY141a), and” Research Methods and Laboratory in Psychology” (PSYC52a). Nic’s research investigates how acute and chronic or repeated stress experiences affect human health across individuals and age groups. His laboratory performs studies with human participants using methods than span behavioral to molecular to understand how the hypothalamus-pituitary-adrenal (HPA) axis and sympathetic nervous system (SNS) regulate peripheral immunological responses and how these processes mediate cardiovascular disease, type 2 diabetes, and cancer, and aging. His research and teaching fill unique niches for all his Brandeis departmental and program affiliations. Nic’s research excellence has been recognized outside Brandeis with awards including the 2013 Herbert Weiner Early Career Award of the American Psychosomatic Society and the 2011 Curt P. Richter Award of the International Society of Psychoneuroendocrinology.

Matthew HeadrickMatthew Headrick (Physics) has been promoted to Associate Professor of Physics. He works at the intersection of three areas of modern theoretical physics: quantum field theory, general relativity, and quantum information theory. In particular, he uses information-theoretic techniques to study the structure of entanglement — a fundamental and ubiquitous property of quantum systems — in various kinds of field theories. Much of his work is devoted to the study of so-called “holographic” field theories, which are equivalent, in a subtle and still mysterious way, to theories of gravity in higher-dimensional spacetimes. Holographic theories have revealed a deep connection between entanglement and spacetime geometry, and Headrick has made significant contributions to the elucidation of this connection. Understanding the role of entanglement in holographic theories, and in quantum gravity more generally, may eventually lead to an understanding of the microscopic origin of space and time themselves.

Isaac Krauss

Isaac Krauss (Chemistry) has been promoted to Associate Professor of Chemistry. He is an organic chemist and chemical biologist whose research is at the interface of carbohydrate chemistry and biology. His lab has devised tools for directed evolution of modified DNA and peptides as an approach to designing carbohydrate vaccines against HIV. Krauss is also a very popular teacher and the recipient of the 2015 Walzer prize in teaching for tenure-track faculty.

Xiaodong Liu (Psychology) has been promoted to Associate Professor in Psychology. Xiaodong provides statistical training for graduate students in Psychology, Heller School, IBS, Neuroscience, Biology, and Computer Science, he serves as a statistical consultant for Xiaodong LiuPsychology faculty and student projects, and he performs research on general & generalized linear modeling and longitudinal data analysis, which he applies to child development, including psychological adjustment and school performance. He teaches “Advanced Psychological Statistics I and II” (PSYC210a,b), “SAS Applications” (PSYC140a), “Multivariate Statistics I: Applied Structural Equation Modeling” (PSYC215a), and “Multivariate Statistics II: Applied Hierarchical Linear Models” (PSYC216a). He is developing a new course on “The R Statistical Package and Applied Bayes Analysis”, and he recently won a Provost’s Innovations in Teaching Grant for “Incorporating Project-based modules in Learning and Teaching of Applied Statistics”.

Gabriella SciollaGabriella Sciolla (Physics) has been promoted to Professor of Physics. She is a particle physicist working on the ATLAS experiment at CERN in Geneva, Switzerland. Sciolla and her group study the properties of the newly discovered Higgs Boson and search for Dark Matter particles produced in high-energy proton-proton collisions at the Large Hadron Collider. Sciolla is also responsible for the reconstruction and calibration of the muons produced in ATLAS. These particles are key to both Higgs studies and searches for New Physics.

Nianwen Xue (Computer Science) has been promoted to Associate Professor of Computer Science.  The Computer Science Department is pleased to annNianwen Xueounce the promotion of Nianwen (Bert) Xue to Associate Professor with tenure. Since joining Computer Science he has made significant contributions to the research and teaching efforts in Computational Linguistics, including growing a masters program from zero up to 18 students this year. His publications are very well regarded, and focus on the development and use of large corpora for natural language processing, especially in Chinese. He has built a sizable lab with diverse funding that students from around the world are vying to enter.

Thank you to the following department chairs for their contributions to this post:

  • Paul DiZio, Psychology
  • Jane Kondev, Physics
  • Jordan Pollack, Computer Science
  • Barry Snider, Chemistry

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