MRSEC offers 2 one-week courses in Summer 2017

Brandeis’ MRSEC is offering two one-week courses in June 2017. “Introduction to Microfluidics Technology” and “Biomaterials: Kinesin Production for Beginners” are both hands-on laboratory courses with no prerequisites.

  • Introduction to Microfluidics Technology
    Date: June 19-23, 2017
    This course is intended for graduate students, post docs, faculty, and industrial scientists/engineers interested in utilizing microfluidic technology in their work, both in the physical and life sciences
  • Biomaterials: Kinesin Production for Beginners
    Date: June 26-30, 2017
    This course is intended for graduate students, postdocs, faculty, and industrial scientists/engineers interested in laboratory-scale expression and purification of kinesins, the biomolecular motors that power Brandeis MRSEC’s highly regarded active liquid crystals. The course is suitable for non-biologists who do not have access to any major specialized equipment at their home institution, since the goal of the course is to make protein production accessible to a wider variety of labs.

Register early (by March 1) for a $50 discount. Regular registration for both courses closes March 31, 2017.

Both courses are sponsored by the National Science Foundation’s Bioinspired Soft Materials Research Science and Engineering Center (MRSEC) at Brandeis.

JBS Offers “Bio-Inspired Design” Course

Maria de Boef Miara, Lecturer in Biology at Brandeis University, will be leading a course titled Bio-Inspired Design this summer (June 1 thru August 7, 2015). Bio-Inspired Design is part of the Justice Brandeis Semester (JBS). JBS combines courses and experiential learning to provide complete, immersive experiences so students can deeply examine a specific area of study.

Bio-Inspired Design is designed for students from a wide spectrum of disciplines, but may be particularly appealing to students in Biology, Biological Physics, Environmental Studies or HSSP areas. This is a 10-week course providing 12 credits.

Students in Bio-Inspired Design will spend the summer working with biologists, engineers and artists in a variety of settings. They will explore intriguing life forms and develop the quantitative tools needed to work at the intersection of form and function.

New team-taught course offered spring 2014: “Differential geometry in classical and quantum mechanics”

1) Introduction and Motivation

We would like to call attention to a new class offered this winter/spring 2014 quarter, being taught jointly by Prof. Daniel Ruberman in Mathematics and Prof. Albion Lawrence in Physics.  This is being listed jointly as Physics 202a (Quantum Field Theory) and Math 221b (Topics in Topology).  It is being team-taught under the auspices of the Brandeis Geometry and Dynamics IGERT program.

This course aims to introduce basic notions of fiber bundles and connections on them, and their application to basic physical examples in classical and quantum mechanics: especially the mechanics of deformable bodies, and Berry’s phase.  The target audience is mathematics and physics students, and mathematically inclined students in physical chemistry, neuroscience, computer science, and economics.  The essential principles here find applications to chemical and neural oscillators and control theory; there have even been suggestions that it is a useful language for describing currency trading.

The mathematics covered here typically appears in advanced courses on quantum and statistical field theory.  However, it has much broader applicability, and the instructors felt that studying more elementary physics examples better highlighted the essential mathematics and lead to a broader perspective that would better prepare students to find new and creative uses for the mathematics.  Furthermore, they allow us to teach a broader audience, as the essential physics background is straightforward and can be explained without the student needing two years of graduate-level physics courses.

This course is essentially a graduate course, but it is certainly appropriate for senior undergraduates with a solid mathematical background (math and physics majors especially).  The modern mathematical language of manifolds and vector bundles will be introduced and used throughout, but with reference to physical and geometric notions.  This will provide physics students with an appropriate vocabulary for further study, while mathematics students can try to grasp the intuition behind the formalism.  Note that the course satisfies one of the IGERT course requirements; however, we strongly encourage non-IGERT students to enroll.

The course is scheduled to take place Mondays and Wednesdays from 2-3:20pm. [Read more…]

Courses for Spring 2013 (I): Advanced NMR spectroscopy

Course registration for Spring 2013 has opened. I asked faculty to share details about new (and old) exciting and different courses being offered this spring.

Tom Pochapsky (Chemistry) writes:
Product Details

We are offering our CHEM 146 “Advanced NMR spectroscopy” course again in the spring, appropriate for grads and advanced undergrads in physics, chem, biochem, biophysics.   Pre-reqs are Physics 10 or equivalent, Math 10 or equivalent.   There is a laboratory component this year (using the 800), intro to theory of NMR and practical applications.  The text for the course is our book [ed.: NMR for Physical and Biological Scientists (Thomas Pochapsky and Susan Sondej Pochapsky, authors)], now available as an e-book.

 

New course on Genomic Health Care

Professor Barbara Lerner will teach a new course, BIOL 235b American Health Policy & Practice and the Delivery of Genomic Health Care, in Spring Semester, 2012. The course is now scheduled for Block X2,  Tuesdays from 6:30 PM–9:20 PM. Enrollment is limited to Genetic Counseling or Health Policy graduate students or with permission of the instructor.

The continuous discovery of genetic markers for common diseases is leading to an increasing demand for genetic services, and for the integration of traditional medical genetics with mainstream medicine and public health care. In addition, the American healthcare system is evolving and huge changes in how care is accessed, financed and delivered can be expected in the coming years. Those providing genetic services will therefore need a strong background in the structure of the American healthcare system and how public policy is influencing the field of medical genetics. This course is specifically designed to meet this objective using a mixture of readings from the literature, writing assignments, lecture, class discussion, guest speakers, and student presentations.

New course on RNA

Professors Michael Rosbash and Nelson Lau will teach a new version of BIOL 176b RiboNucleicAcids (RNA) in Spring Semester, 2012. The course is now scheduled for Block S8   W 9:00 AM–11:50 AM.

RNA is a central molecule of all living organisms.  RNA is extremely versatile and can function as an information storage and transfer device, an enzyme, a regulator of gene expression, or a cellular scaffold.   As biologists discover new types of RNAs and new functions for these different types, students must become aware of this progress to gain a complete view of the integral nature of RNA in all branches of the life sciences.

This seminar course will be a weekly discussion of primary literature that broadly covers key breakthroughs in this important subfield of molecular biology. We will examine the versatility and biological functions of RiboNucleicAcides (RNA) in an upper-level seminar and primary-literature based course.Topics include splicing and the spliceosome, the ribosome, ribozymes and the RNA World Hypothesis, RNA editing, RNA interference, and long non-coding RNAs.

This course intends to educate students to become experts on the diverse biological function of RNA.  This course is designed for fulfilling the science requirement for Biology majors. Students will learn how to read the primary literature on classic and recent discoveries concerning RNA.

New course in Cell Biology

The Department of Biology will offer a new course in Advanced Cell Biology (BIOL 100b) in Spring semester, 2012. The course is scheduled for Block D (MWTh 11:00-11:50a) and will be taught by Assistant Professor of Biology Satoshi Yoshida.

Yeast cytoskeletonThis is an advanced course on mechanisms of cellular functions, open to graduate students and advanced undergraduates with a strong interest in cell biology.

The class will use both textbooks and original literature,  and will cover broad topics in the field of cell biology. It will discuss why and how misregulation of cell function leads to diseases such as cancer and ageing. The goal of the course is not to simply provide a broad knowledge of cell biology, but also to learn how experiments were designed to test specific hypothesis and to learn how scientists interpret the data to make a model.

New courses, Fall 2011

New courses offered in the Division of Science in Fall, 2011:

BISC 9B Biology of Cancer (Dore)

Introduces the fundamental aspects of cancer development, progression and treatment with an emphasis on the cellular and molecular changes thought to lead to cancer. Both genetic and lifestyle factors and their impact on the predisposition to develop and recover from cancer will be discussed. Usually offered every year.

CBIO 101A  Chemical Biology (Pontrello)

Chemical biology is not just biochemistry, and the subject involves much more than a simple combination of chemistry and biology topics. This course will explore how recent cutting edge scientific work in chemistry has led to a deeper fundamental understanding of and ability to manipulate biological processes. Emphasis will be placed on the design and chemical synthesis of micro and macromolecular structures that allow scientists to ask unique chemical and biological questions as well as to control biological systems. Both synthetic strategies and characterization as well as biological evaluation and utility will be discussed. The course will consist of scientific literature readings, periodic assignments and exams based on literature and lecture content, as well as group projects and exercises. A textbook is not required, although retention of prerequisite course textbooks is strongly recommended. Topics will range from fluorescent probes, chemical inducers of dimerization, bacterial chemotaxis, controlling stem cell differentiation, solid phase synthesis, synthetic nucleotides, B cell activation, and chemical-inducers of dimerization, just to name a few.

This is not an introductory science course, and the structure will be designed to enhance student understanding of the subject through primary literature and group discussion and review. After several instructor lectures covering general chemistry and biology background, each class will be structured around student presentations of assigned primary scientific literature as a starting point for class discussion about the area of research. The course will also include a project where each student will search chemical biology journals, select a recent article they find interesting, and prepare a report explaining background, fundamental chemistry and biology addressed in the paper, results and applications, and also future directions and implications for the field. The final exam will be based on the content of this collective work.

BCHM 104A Physical Chemistry of Macromolecules I (C.Miller, Oprian)

Covers basics of physical chemistry underpinning applications in BCHM 104b. Focus is placed on quantitative treatments of the probabilistic nature of molecular reality: molecular kinetic theory, basic statistical mechanics, and chemical thermodynamics in aqueous solution. Usually offered every second year

BIOL 107A Data Analysis and Statistics Workshop (Van Hooser)

The interpretation of data is key to making new discoveries, making optimal decisions, and designing experiments. Students will learn skills of data analysis through hands-on, computer-based tutorials and exercises that include experimental data from the biological sciences. Knowledge of very basic statistics (mean, median) will be assumed. Usually offered every second year.

BCHM 172A Cholesterol in Health and Disease (Westover)

In today’s supermarkets, many foods are proudly labeled “cholesterol-free.” 1in 4 Americans over 45 take medicine to lower their cholesterol levels.  Yet, every beginning biology student learns that cholesterol is an essential component of mammalian cell membranes.

This fall, the Biochemistry Department’s Emily Westover will teach a new course called Cholesterol in Health and Disease, BCHM 172a. Drawing from the current literature, students in this course will explore many facets of cholesterol science.  This course will be case study in cholesterol, bringing together concepts from a variety of disciplines, including cell biology, biophysics, biochemistry, physiology and medicine.

The class will address questions such as:

  • How does the body balance production and dietary uptake of cholesterol?
  • What effects does cholesterol have on membrane and protein function?
  • What is the connection between cholesterol and atherosclerosis?

BCHM 172 will meet Tuesdays at 2 pm in the 4th floor Ros-Kos Conference Room.

NBIO 157A Project Laboratory in Neurobiology and Behavior (Vecsey)

What is it like to be a scientist?

Many college science courses don’t help students answer that question. In lecture courses, a host of scientific facts are taught via textbook, but at the end of the course students have read little if any primary research, and would be hard-pressed to explain in detail how those facts were discovered. Courses with labs often have “recipe books” that lay out all of the necessary ingredients and steps required to achieve a desired experimental result. Even students who try to get scientific training by working in a lab may at first be relegated to perform menial tasks that are not fully representative of the scientific process.

With all of this in mind, Brandeis University introduced a series of courses called Project Labs. In these courses, students carry out legitimate research projects in a range of disciplines. No cookbooks, no expected outcomes. We start with an introduction to a biological question, and then set about answering it. We read primary literature to understand the basis for the research we will carry out, and we write up the results in a true journal format.

The newest installment in the Project Lab series is Bio157a, the Project Lab in Neurobiology and Behavior. In this course, the ultimate goal is to understand how an animal like the fruit fly senses and responds to temperature. Specifically, we will examine temperature preference behavior in Drosophila melanogaster and several related species. Some of those species are native to cold climates, whereas others hail from deserts such as the Mojave. Have these species evolved to prefer different temperatures? Or are they simply more tolerant of those temperatures? These are some of the core questions that we will address. What the results will be we can only guess – and that’s what it’s like to be a scientist!

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