The Brandeis GPS blog

Insights on online learning, tips for finding balance, and news and updates from Brandeis GPS

Tag: Bioinformatics (page 1 of 3)

Brandeis GPS Student Spotlight

 

Photo of Minh Huyen Nguyen.Student Spotlight

Minh Huyen Nguyen ‘22

Cambridge, Massachusetts 

Foundation Medicine

Program: MS in Bioinformatics

In her spare time, Minh enjoys cooking, and volunteering for a non-profit organization operated by a team of volunteers who are international students and Vietnamese professionals around the world to promote activities and provide free courses related to STEAM education for Vietnamese young students. 

Get to know Minh Huyen Nguyen! 

Why did you choose Brandeis GPS?

I chose to apply for the Master of Science in Bioinformatics at Brandeis University because I was drawn to its perspectives in providing students with the cutting-edge intellectual approaches to multiple complex biological systems through big data wrangling, synthesis, experiment design, and computational solutions based upon a multidisciplinary foundation. 

What inspired you to choose your field of study?

I was always interested in science and technology, and how it contributes to the development of human well-being through biomedical research and practical applications with information technology. With my background in biochemistry and data analytics during college and then pursuing a career in the biotech industry, it really inspires me to choose to apply to the MS in Bioinformatics program.   

How have you enjoyed your experience at Brandeis thus far? 

The lessons are structured well and really engage students with the contents from the courses, despite the virtual platform of the program. The weekly discussion forum also provides a good opportunity for the students to participate in the conversation with the classmates and the instructors, and to learn from each other’s perspectives.

What are your hopes and aspirations for the rest of your time at Brandeis? 

I hope to take courses that would help me extend my knowledge about the useful bioinformatics tools and techniques and how to apply them to solve real-world problems in the jobs.

What are your plans for after graduation?

I’ll continue to pursue my career in Biotech and further explore opportunities that I can apply what I have learned from the courses at Brandeis.

What advice would you give to incoming students?

Be ready to work independently and learn from “outside of the box”.

What has been your favorite class to-date?

RBIF111, challenging but indeed a very helpful course.

 

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Looking back: the growth of Python

Since Guido van Rossum first released Python to the public in 1991, it has become one of the fastest growing major programming languages and established itself as the defacto language among varied scientific communities.

Python is particularly valuable to today’s forward-thinking industries and technologies, including data science and machine learning. Its intuitive platform makes it appealing for new programmers, yet it can also serve as a tool for more complex purposes.

Some of the features of Python include:

  • Minimal keywords, simple structure, and a clearly defined syntax
  • Code that is much shorter than former industry-leader JavaScript
  • A broad standard library that is portable and compatible on a number of hardware platforms
  • A mode allowing interactive testing and debugging of pieces of code
  • Tool customization for efficiency using added low-level modules

Master Python Programming

Brandeis GPS offers multiple online courses that teach the programming language specific to certain industries: Python Programming (FinTech), Bioinformatics Scripting and Python Programming (Bioinformatics), and Python for Robotics and AI  (Robotics). All three courses are available for professional development as long as students can demonstrate previous basic experience with a programming language (or undergraduate-level coursework).

Brandeis GPS offers rolling admission to our 12 fully-online master’s degree programs, so you can apply and be accepted at any time. However, we do have recommended deadlines if you are seeking admission for a specific term. The deadline to apply to our Spring 1 session is Wednesday, December 19. You can apply here. Those interested in taking a course who do not yet wish to pursue a full master’s degree can still take up to two online courses without officially enrolling.

To learn more about GPS courses or graduate programs, check out our website or contact gps@brandeis.edu or 781-736-8787.

Molecular Biology, Genetics, and Disease

Biotechnology and pharmaceutical organizations are increasingly viewing bioinformatics as an integral part of their research processes. Biomedical industries are seeking to make use of vast amounts of genomic data to produce complex and accurate biological models.

Brandeis GPS will be offering Molecular Biology, Genetics, and Disease  as a part-time, fully online course this October. The 10-week course will introduce students to the basic concepts of molecular, cell, and developmental biology. It will cover classic genetics, from Mendelian inheritance to quantitative and complex traits, associations and population genetics. It will address the anatomy and function of genomes from humans and model organisms. Using the Human Genome Projects as an example, students will learn sequencing and mapping technologies. Basic sequence analysis methods will be introduced, along with techniques to navigate genome browsers and other relevant databases.

At the end of the course, students will be able to:

  • Navigate genome browsers and databases relevant to genetics and genomics.
  • Analyze pedigrees and apply genetics to identify disease associations.
  • Use techniques of physical and genetic mapping and sequencing.
  • Use comparative genomics to detect homologous sequences within and between organisms and to define evolutionary relationships.
  • Predict possible consequences of mutations and genetic variation within and outside of genes.
  • Use examples from developmental biology, human disease and immunology to illustrate genetic control mechanisms and mutations.

At Brandeis GPS, you can take up to two courses before enrolling in one of our 12 online master’s degrees. If you’re interested in exploring the MS in Bioinformatics, or would like to explore molecular biology to fill a bioinformatics skills gap, contact the  GPS office for more information or to request a syllabus: 781-736-8787, gps@brandeis.edu, or submit your information.

Right kind of graduate study can give current biotech staff boost we seek

In their June 4 op-ed, Mayor Marty Walsh and Vertex Pharmaceuticals President, CEO and Chairman Dr. Jeffrey Leiden make a compelling case for strengthening the biotech workforce pipeline in Massachusetts. Establishing strong public-private partnerships with Boston Public Schools is a necessary strategy for developing and retaining young talent for the state’s growing biopharmaceutical sector.

It is equally important, however, that we not overlook alternative pipelines for workforce development. Professional master’s degrees can help research assistants, engineers, lab technicians and other qualified biotech professionals transition into the more advanced bioinformatics positions that Massachusetts relies on to remain competitive.

As we continue prioritizing investments in economic growth and innovation, we must remember that there is more than one educational pathway toward closing the biopharma skills gap. The right type of graduate education can equip professionals who already have a foothold in the industry with the technology and expertise to advance their careers, producing a new wave of talented employees who can take on this complex and incredibly important work.

 

This letter first appeared in the Boston Globe on June 10.

SPOTLIGHT ON JOBS: HARVARD SCHOOL OF PUBLIC HEALTH

Spotlight on Jobs - Brandeis GPS Online Education - Brandeis GPS Blog

Members of the Brandeis GPS Community may submit job postings from within their industries to advertise exclusively to our community. This is a great way to further connect and seek out opportunities as they come up. If you are interested in posting an opportunity, please complete the following form found here.

Where: Work can be done remotely, but the RA should be available to meet in person at the Longwood medical campus at least once a week.

Continue reading

GPS student wins big at Brandeis Innovation’s SPARKTank competition

Brandeis Bioinformatics student Donald Son and his team of entrepreneurs took third place in last Sunday’s university-wide SPARKTank competition, an annual live-pitch event hosted by Brandeis Innovation.

Competing against 12 other groups seeking seed funding to bring their startups to market, Son’s team received $10,000 to further their work on Green Herb Analytics (HerbDx). The California-based facility uses analytical chemistry, software integration and medicinal cannabinoid biology to provide quality assurance lab testing and ensure that the product entering the market is safe for human consumption. The startup also seeks to establish an innovative, cutting-edge brand with affordable prices.

While Son himself does not use cannabis, he has a personal connection to unregulated supplements and medicines and their impact on public health.

Brandeis Innovation SPARKTank - Brandeis GPS Online Education - Brandeis GPS Blog“I take herbs to manage my chronic fatigue syndrome and was initially concerned about what I was putting into my body,” said Son. “During my own research, I came across cannabis just as it was being voted on for recreational use in California. I felt the need to ensure the safety of this product to the consumer.”

HerbDx plans to put its seed funding toward a small lab space, a mass spectrometer to optimize pesticide testing, and to advance production and marketing efforts. Outreach efforts will include an increased digital and social media presence, partnerships with special interest groups, and visibility at trade shows and conferences.

About SPARKTank
SPARKTank is a live pitch event where Brandeis entrepreneurs compete for seed funding in front of a live audience. Thirteen teams comprised of Brandeis students, faculty and staff pitched their innovative ideas to a panel of industry judges with the hopes of receiving a portion of the $50,000 grant pool. The pitches included startups, technologies and entrepreneurial ventures, which demonstrated the extensive breadth of entrepreneurial spirit at Brandeis University.

The Best Jobs for Life-Work Balance

Glassdoor, a popular jobs and recruitment website, recently released a crowd-sourced list of best jobs for achieving work-life balance. Many of the positions in the Glassdoor list directly correspond to the industry-driven master’s degrees offered at GPS. Among the 29 positions profiled include:

1. Lab Assistant
2. Creative Manager
3. Computer Programmer
4. Marketing Coordinator
5. Data Analyst
6. Content Manager
7. Web Designer
8. Social Media Manager
9. Scrum Master
10. Marketing Analyst
11. Devops Engineer
12. Mobile Developer
13. User Interface Designer
14. Data Scientist
15. User Experience Designer

Whether you currently hold one of the positions above or are interested in advancing into a similar job, you’re probably looking to achieve balance in all areas of your life. For those seeking to pursue a graduate degree, Brandeis GPS fosters a community that is mindful of the multiple demands facing adult learners and while offering the rigorous standards of excellence that makes Brandeis one of the top universities in the country.

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