Hunting Novel Viruses in a Lab Course

Last Fall the Biology department mounted a new course (BIOL 152B),  the Virus Hunter Lab. This course combines practical experience in the lab with computer based approaches in bioinformatics. Students in the class isolated a type of virus that infects bacteria called a bacteriophage. In the wet lab, they learned basic microbiology techniques for isolating the viruses and basic molecular biology techniques for extracting the DNA of the viral genomes. With the biological material in hand the class prepared next generation sequencing libraries. The students assembled and annotated the complete genome of two previously unknown bacteriophage using next generation sequencing data from the samples they prepared. To find out more about it you can read their paper. Grad students Meghan Harris (MCB), their TA, and Tereasa Ho (Biotechnology) along with the inaugural group of undergraduate students are all authors on a paper recently published in the journal Microbiology Resource Announcements (MRA).

Harris MT, Ho TC, Fruchtman H, Garin ME, Kubatin V, Lu T, Xue L, Marr MT. Complete Genome Sequences of Two Vibrio natriegens Bacteriophages. Microbiology Resource Announcements. 2020;9(45).

Electron microscope image of the novel bacteriophage (VH2), photo by Jesse Cochrane

Meet the Science UDRs at the Ultimate Science Navigation Event (9/23)

Ultimate Science Navigation posterAt The Ultimate Science Navigation event TOMORROW (9/23), students can collaborate with the science UDRs to learn about the different offerings in the sciences, how to navigate each major/minor, what each major/minor has to offer, all with an emphasis on exploring the intersections between different programs in the sciences. We will have UDRs representing biochemistry, biology, neuroscience, chemistry, physics, and biophysics!

Students can join in the morning on Zoom from 9:30-10AM, or for the rest of the day through the new Brandeis science community Slack workspace to discuss their questions related to the majors with the UDRs! Email Lance Babcock (lbabcock@brandeis.edu), Maggie Wang (maki@brandeis.edu) or the other science UDRs for the Zoom link and Slack workspace link.

Alumni and Student Researchers Wow Crowd at 2019 SciFest

With a new alumni symposium in the morning and a poster session filling three floors of the Science Center atrium in the afternoon, this year’s SciFest IX set a new standard for Brandeis Science’s annual celebration of undergraduate research.


Photos: Heratch Ekmekjian

Since 2011, a poster session featuring the results from ongoing projects belonging to undergraduates doing science research has been the high point of summer in the Division of Science at Brandeis. This year, for the first time, we invited Brandeis alumni scientists to speak in a morning symposium entitled “A Celebration of Brandeis’ Undergraduate Science Education”, including:

Students and faculty in the audience were treated to a history of Brandeis and reflections on many of the Brandeis professors and courses that set them on their career path and whose influence persists to the present in how they approach their science, and on lessons they learned that continue to guide their work.

After lunch in the campus center, the crowd climbed up to the Shapiro Science Center for the poster session. 123 students presented 117 posters on topics from high-energy physics to biomaterials and from quantum chemistry to fruit fly behavior. As President Ron Liebowitz noted in an email to the Science community after the event:

The energy in Shapiro during the poster session was electric.  The students’ confidence and excitement over sharing their research can only give us great optimism about the future: they are “all in” when it comes to doing basic research, but also seeing how such research can be applied in the name of helping others.

Many of the posters can be found in the hallway in Gerstenzang – look for them when classes start again in a few weeks!

SciFest IX by the numbers

  • 117 posters
  • 123 student presenters (out of approx. 210 summer student researchers)
    • 105 Brandeis students
      • 99 presenting research done on campus
      • 6 presenting work done over the summer off-campus
    • 18 visiting students
  • 45 Brandeis faculty advisors from 7 departments
    • Biochemistry (7)
    • Biology (18)
    • Chemistry (8)
    • Computer Science (1)
    • Physics (6)
    • Psychology (5)
    • Sociology (1)

Undergrad summer research funding, 2019

The Division of Science announces the opening of the Division of Science Summer Undergraduate Research Fellowship competition for Brandeis students who will be doing undergraduate research in Summer 2019.  These fellowships are funded by generous alumni donations and by grants. Winners will get $5000 stipends for the summer.

Some funding programs have changed since last year; please see the Div Sci website for details of the programs which fund students across all the sciences. We expect to fund about 30 students this summer.

The due date for applications  is February 27, 2019  at 6:00 PM EST.

Students who will be rising Brandeis sophomores, juniors, or seniors in Summer 2019 (classes of ’20, ’21 and ’22), who in addition are working in a lab in the Division of Science at the time of application, are eligible to apply. A commitment from a Brandeis faculty member to serve as your mentor in Summer 2019 is required.

The Division of Science Summer Program will run from June 3 – Aug 9, 2019. Recipients are expected to be available to do full time laboratory research during that period, and must commit to presenting a poster at the final poster session (SciFest IX) on Aug 8, 2019.

Interested students should apply online (Brandeis login required). Questions that are not answered in the online FAQs may be addressed to Steven Karel <divsci at brandeis.edu>.

Grants for undergraduate research in computational neuroscience

The Division of Science is pleased once again to announce the availability of Traineeships for Undergraduates in Computational Neuroscience through a grant from the National Institute on Drug Abuse. Traineeships will commence in summer 2020 and run through the academic year 2020-21.

From former trainee Dahlia Kushinksy’s first-author paper published in Journal of Experimental Biology, “In vivo effects of temperature on the heart and pyloric rhythms in the crab, Cancer borealis”

Please apply to the program by February 26, 2020 at 6 pm to be considered.

 

Traineeships in Computational Neuroscience are intended to provide intensive undergraduate training in computational neuroscience for students interested in eventually pursuing graduate research. The traineeships will provide approximately $5000 in stipend to support research in the summer, and $3000 each for fall and spring semesters during the academic year. Current Brandeis sophomores and juniors (classes of ’21, ’22) may apply. To be eligible to compete for this program, you must

  • have a GPA > 3.0 in Div. of Science courses
  • have a commitment from a professor to advise you on a research project related to computational neuroscience
  • have a course work plan to complete requirements for a major in the Division of Science
  • complete some additional requirements
  • intend to apply to grad school in a related field.

Interested students should apply online (Brandeis login required). Questions may be addressed to Steven Karel <divsci at brandeis.edu> or to Prof. Paul Miller.

SciFest VIII wrap-up

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The Brandeis University Division of Science held its annual undergraduate research poster session SciFest VIII on August 2, 2018, as more than one hundred student researchers presented summer’s (or last year’s) worth of independent research. We had a great audience of grad students and postdocs (many of whom were mentors), faculty, proud parents, friends, and senior administrators.

SciFest VIII by numbers

  • 105 posters
  • 105 student presenters out of approx. 175 summer student researchers
    • 84 Brandeis students
    • 2 international students (from India)
    • 19 visiting domestic students
  • 41 Brandeis faculty advisors from 7 departments
    • Biochemistry (7)
    • Biology (17)
    • Chemistry (5)
    • Computer Science (1)
    • Mathematics (1)
    • Physics (7)
    • Psychology (4)
  • 12 different Brandeis undergraduate majors represented

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